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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
13
ATAC-seq
12
ChIP-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
15
DNA accessibility
12
DNA binding
8
3D chromatin structure
Target of assay
9
histone
9
histone modification
8
broad histone mark
6
control
1
narrow histone mark
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
99
bigWig
97
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
19
bed narrowPeak
17
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
bed broadPeak
4
hdf5
Organism
127
Homo sapiens
Biosample type
96
tissue
31
primary cell
Organ
31
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
10
pancreas
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
127
AMP
Genome assembly (visualization)
100
hg19
89
GRCh38
Lab
127
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
127 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
ChIP-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
1
12
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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