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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
25
ChIP-seq
20
total RNA-seq
2
Hi-C
Assay category
33
DNA accessibility
25
DNA binding
20
Transcription
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
14
broad histone mark
5
control
5
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
bam
49
bed narrowPeak
45
bigWig
20
tsv
17
fastq
14
tagAlign
6
bigBed narrowPeak
bed broadPeak
2
bedpe bed3+
2
hic
Organism
80
Homo sapiens
Biosample type
59
tissue
16
cell line
5
in vitro differentiated cells
Organ
59
pancreas
16
epithelium
13
brain
2
adipose tissue
2
connective tissue
1
spleen
Project
80
AMP
Genome assembly (visualization)
68
hg19
67
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
brain
12
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
EndoC_BH1
1
13
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
See all biosamples
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