Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
6
ChIP-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
6
DNA binding
Target of assay
5
histone
5
histone modification
4
broad histone mark
4
control
1
narrow histone mark
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
99
bigWig
97
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
19
bed narrowPeak
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
114
Homo sapiens
Biosample type
83
tissue
31
primary cell
Organ
25
heart
24
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
114
AMP
Genome assembly (visualization)
91
hg19
79
GRCh38
Lab
114
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
114 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
ChIP-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
brain
1
6
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
See all biosamples
Download