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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
56
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
56
DNA binding
Target of assay
32
histone
32
histone modification
28
narrow histone mark
24
control
4
broad histone mark
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
298
bam
274
bigWig
189
tsv
64
tagAlign
39
bed narrowPeak
fastq
6
bigBed narrowPeak
4
bed broadPeak
Organism
347
Homo sapiens
Biosample type
199
tissue
147
primary cell
1
cell line
Organ
194
liver
6
brain
Project
302
AMP
45
T1D
Genome assembly (visualization)
260
hg19
207
GRCh38
Lab
302
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
347 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
6
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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