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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
MeRIP-seq
9
ATAC-seq
9
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
1
DNase-seq
Assay category
15
DNA binding
12
Transcription
10
DNA accessibility
Target of assay
12
histone
12
histone modification
10
broad histone mark
8
control
5
nucleotide modification
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
26
bam
24
bigWig
17
fastq
14
bed narrowPeak
14
tagAlign
13
tsv
7
bigBed narrowPeak
5
bed broadPeak
1
bed bed3+
1
bigBed broadPeak
Organism
49
Homo sapiens
Biosample type
30
tissue
11
primary cell
6
cell line
2
in vitro differentiated cells
Organ
16
brain
15
pancreas
12
epithelium
7
connective tissue
5
liver
3
kidney
1
adipose tissue
1
spleen
Project
49
AMP
Genome assembly (visualization)
25
GRCh38
24
hg19
Lab
38
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
4
audit script error
Audit category:
4
missing controlled_by
month_released!
November, 2019
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
DNase-seq
tissue
brain
15
islet of Langerhans
4
1
body of pancreas
4
cerebellum (Hemisphere)
1
kidney
1
+ See 4 more…
primary cell
osteoblast
1
4
1
hepatocyte
5
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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