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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
311
ChIP-seq
89
total RNA-seq
13
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
311
DNA binding
Target of assay
211
histone modification
210
histone
119
broad histone mark
90
narrow histone mark
53
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
190
fastq
189
bam
177
bigWig
138
bed narrowPeak
99
tagAlign
42
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
13
bigBed broadPeak
Organism
304
Homo sapiens
Biosample type
191
tissue
67
in vitro differentiated cells
53
primary cell
Organ
117
connective tissue
94
pancreas
50
adipose tissue
48
liver
26
epithelium
22
musculature of body
15
brain
Project
311
AMP
Genome assembly (visualization)
179
hg19
157
GRCh38
Lab
311
AMP-T2D consortium
Audit category:
43
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
311 results
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Clear Filters
ChIP-seq
tissue
liver
48
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
brain
15
+ See 3 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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