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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
84
RNA microarray
30
ATAC-seq
27
snATAC-seq
23
ChIP-seq
18
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
537
Transcription
57
DNA accessibility
23
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
5
transcription factor
2
narrow histone mark
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
561
bam
539
bigWig
527
tsv
89
txt
56
fastq
35
bed narrowPeak
22
tagAlign
6
bigBed narrowPeak
6
csv
4
bed bedgraph
4
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
706
Homo sapiens
Biosample type
568
tissue
70
cell line
42
primary cell
26
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
37
pancreas
epithelium
16
brain
8
kidney
8
skeleton
6
limb
3
liver
1
spleen
Project
667
AMP
39
HPAP
Genome assembly (visualization)
561
hg19
556
GRCh38
Lab
666
AMP-T2D consortium
39
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent replicate
Audit category:
4
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
706 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
brain
15
kidney
5
+ See 19 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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