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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
15
ChIP-seq
14
ATAC-seq
12
WGBS
9
RRBS
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
21
DNA methylation
16
DNA accessibility
15
DNA binding
6
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
92
bam
92
bigWig
60
tsv
19
bed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed broadPeak
2
bed bed3+
2
hdf5
Organism
118
Homo sapiens
Biosample type
100
tissue
18
primary cell
Organ
34
brain
25
heart
19
connective tissue
13
adipose tissue
epithelium
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
118
AMP
Genome assembly (visualization)
91
hg19
88
GRCh38
Lab
117
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
small RNA-seq
ChIP-seq
ATAC-seq
WGBS
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
2
4
1
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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