Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
71
ChIP-seq
8
ATAC-seq
5
total RNA-seq
Assay category
195
DNA accessibility
71
DNA binding
5
Transcription
Target of assay
38
histone
38
histone modification
22
broad histone mark
18
transcription factor
16
narrow histone mark
15
control
10
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
263
bam
250
bigWig
243
bed narrowPeak
237
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
47
fastq
14
tagAlign
5
tsv
Organism
271
Homo sapiens
Biosample type
193
tissue
55
primary cell
23
cell line
Organ
81
kidney
46
brain
43
musculature of body
35
heart
32
limb
20
epithelium
19
connective tissue
18
blood
18
bodily fluid
18
ureter
9
pancreas
8
spleen
7
eye
7
liver
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
271
AMP
Genome assembly (visualization)
250
GRCh38
226
hg19
Lab
270
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
271 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
cell line
GM12878
18
HepG2
5
See all biosamples
Download