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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
Assay category
135
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
104
histone
104
histone modification
68
broad histone mark
36
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
135
bam
111
bigWig
109
bed narrowPeak
103
bigBed narrowPeak
17
fastq
14
tagAlign
4
bed broadPeak
Organism
161
Homo sapiens
Biosample type
157
tissue
5
primary cell
Organ
50
blood vessel
50
vasculature
44
brain
21
heart
19
lung
7
limb
7
musculature of body
7
pancreas
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
1
spleen
Project
143
AMP
19
LungMap
Genome assembly (visualization)
110
GRCh38
110
hg19
Lab
142
AMP-T2D consortium
19
Xin Sun, UCSD
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
tissue
lung
10
9
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
+ See 12 more…
primary cell
kidney epithelial cell
5
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