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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
8
ATAC-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
135
DNA binding
8
DNA accessibility
3
Transcription
Target of assay
104
histone
104
histone modification
68
broad histone mark
36
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
138
bam
114
bigWig
109
bed narrowPeak
103
bigBed narrowPeak
21
fastq
14
tagAlign
4
bed broadPeak
3
tsv
1
bedpe bed3+
Organism
147
Homo sapiens
Biosample type
138
tissue
8
primary cell
1
in vitro differentiated cells
Organ
50
blood vessel
50
vasculature
44
brain
21
heart
10
pancreas
8
epithelium
7
limb
7
musculature of body
5
artery
5
kidney
2
adipose tissue
2
connective tissue
1
spleen
Project
147
AMP
Genome assembly (visualization)
113
GRCh38
113
hg19
Lab
146
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
147 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
angular gyrus
13
+ See 11 more…
primary cell
kidney epithelial cell
5
pancreatic alpha cell
2
pancreatic acinar cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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