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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
10
MeRIP-seq
9
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
135
DNA binding
10
DNA accessibility
4
Transcription
Target of assay
104
histone
104
histone modification
68
broad histone mark
36
narrow histone mark
31
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
141
bam
116
bigWig
111
bed narrowPeak
104
bigBed narrowPeak
17
fastq
14
tagAlign
5
bed broadPeak
4
tsv
1
bed bed3+
1
bigBed broadPeak
Organism
159
Homo sapiens
Biosample type
142
tissue
11
primary cell
6
cell line
Organ
50
blood vessel
50
vasculature
44
brain
21
heart
17
pancreas
11
epithelium
7
connective tissue
7
limb
7
musculature of body
5
artery
5
kidney
1
adipose tissue
1
spleen
Project
159
AMP
Genome assembly (visualization)
116
GRCh38
116
hg19
Lab
148
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
9
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
DNase-seq
tissue
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
angular gyrus
13
+ See 11 more…
primary cell
osteoblast
1
4
1
kidney epithelial cell
5
cell line
EndoC_BH1
6
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