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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
10
MeRIP-seq
9
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
128
DNA binding
10
DNA accessibility
4
Transcription
Target of assay
98
histone
98
histone modification
64
broad histone mark
34
narrow histone mark
30
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
bam
110
bigWig
105
bed narrowPeak
98
bigBed narrowPeak
17
fastq
14
tagAlign
5
bed broadPeak
4
tsv
1
bed bed3+
1
bigBed broadPeak
Organism
152
Homo sapiens
Biosample type
135
tissue
11
primary cell
6
cell line
Organ
50
blood vessel
50
vasculature
44
brain
21
heart
17
pancreas
11
epithelium
7
connective tissue
7
limb
musculature of body
5
artery
5
kidney
1
adipose tissue
1
spleen
Project
152
AMP
Genome assembly (visualization)
111
GRCh38
110
hg19
Lab
141
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
9
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
DNase-seq
tissue
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
angular gyrus
13
+ See 10 more…
primary cell
osteoblast
1
4
1
kidney epithelial cell
5
cell line
EndoC_BH1
6
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