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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
137
DNA binding
18
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
104
histone
104
histone modification
69
transcription factor
broad histone mark
36
narrow histone mark
32
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
159
bam
128
bigWig
119
bed narrowPeak
113
bigBed narrowPeak
99
fastq
11
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tagAlign
1
csv
Organism
163
Homo sapiens
Biosample type
98
tissue
61
cell line
4
primary cell
Organ
53
liver
28
blood vessel
28
vasculature
21
brain
15
blood
15
bodily fluid
14
heart
14
pancreas
10
spleen
5
artery
3
epithelium
3
kidney
3
limb
3
musculature of body
2
adipose tissue
2
connective tissue
Project
163
AMP
Genome assembly (visualization)
126
GRCh38
118
hg19
Lab
162
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
163 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
body of pancreas
2
2
4
2
spleen
6
1
1
2
thoracic aorta
9
ascending aorta
8
brain
5
2
+ See 14 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
3
pancreatic cell
1
See all biosamples
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