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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ChIP-seq
190
total RNA-seq
108
ATAC-seq
1
pCHi-C
Assay category
471
DNA binding
190
Transcription
108
DNA accessibility
Target of assay
244
transcription factor
127
histone
127
histone modification
97
control
67
narrow histone mark
66
recombinant protein
60
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
690
bam
608
bigWig
352
bed narrowPeak
341
fastq
318
bigBed narrowPeak
189
tsv
142
tagAlign
74
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
770
Homo sapiens
Biosample type
316
cell line
298
tissue
156
primary cell
Organ
509
liver
107
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
725
AMP
45
T1D
Genome assembly (visualization)
554
hg19
501
GRCh38
Lab
724
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
770 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
315
1
tissue
liver
50
143
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
+ See 7 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
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