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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
8
ATAC-seq
Assay category
406
DNA binding
8
DNA accessibility
Target of assay
244
transcription factor
100
histone
100
histone modification
74
control
66
recombinant protein
60
broad histone mark
40
narrow histone mark
37
RNA binding protein
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
392
bam
333
bigWig
326
fastq
310
bed narrowPeak
303
bigBed narrowPeak
92
tagAlign
70
bed broadPeak
60
bigBed broadPeak
3
tar
Organism
414
Homo sapiens
Biosample type
300
cell line
105
tissue
9
primary cell
Organ
300
liver
107
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
414
AMP
Genome assembly (visualization)
281
GRCh38
279
hg19
Lab
413
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
414 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
300
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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