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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
9
DNase-seq
8
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
83
DNA binding
18
DNA accessibility
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
narrow histone mark
Date released
709
February, 2021
368
November, 2017
334
May, 2021
314
May, 2020
308
August, 2017
308
August, 2021
207
June, 2019
205
February, 2023
173
October, 2019
168
July, 2018
159
May, 2022
86
May, 2019
81
July, 2019
81
November, 2018
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
97
fastq
94
bam
86
bigWig
84
bed narrowPeak
78
bigBed narrowPeak
12
bed broadPeak
12
tagAlign
9
bed bed3+
9
bigBed broadPeak
1
csv
Organism
102
Homo sapiens
Biosample type
60
cell line
41
tissue
1
primary cell
Organ
52
liver
16
brain
15
blood
15
bodily fluid
8
pancreas
8
spleen
2
adipose tissue
2
connective tissue
Project
102
AMP
Genome assembly (visualization)
85
GRCh38
83
hg19
Lab
101
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
6
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
GM12878
15
tissue
brain
13
2
spleen
6
1
1
body of pancreas
2
4
liver
4
2
omental fat pad
1
1
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primary cell
pancreatic cell
1
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