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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
Assay category
119
DNA binding
18
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
92
transcription factor
23
RNA binding protein
16
recombinant protein
13
control
12
histone
12
histone modification
10
broad histone mark
9
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
140
fastq
136
bam
124
bigWig
115
bed narrowPeak
109
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
csv
Organism
145
Homo sapiens
Biosample type
89
cell line
56
tissue
Organ
54
liver
42
blood
42
bodily fluid
18
brain
17
spleen
12
pancreas
2
adipose tissue
2
connective tissue
Project
145
AMP
Genome assembly (visualization)
123
GRCh38
114
hg19
Lab
144
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
csv
BIOSAMPLE
ASSAY
145 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
Hi-C
cell line
HepG2
45
1
1
GM12878
42
tissue
brain
15
2
spleen
13
1
1
2
body of pancreas
2
4
2
liver
4
2
pancreas
2
1
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