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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
26
total RNA-seq
22
ATAC-seq
9
DNase-seq
7
WGBS
5
single cell RNA-seq
1
FAIRE-seq
Assay category
117
DNA binding
32
DNA accessibility
31
Transcription
7
DNA methylation
Target of assay
64
transcription factor
44
histone
44
histone modification
27
broad histone mark
21
RNA binding protein
17
narrow histone mark
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
181
fastq
177
bam
169
bigWig
131
bed narrowPeak
93
bigBed narrowPeak
29
tsv
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
187
Homo sapiens
Biosample type
77
primary cell
61
cell line
49
tissue
Organ
85
pancreas
62
epithelium
53
liver
18
brain
15
blood
15
bodily fluid
10
spleen
2
adipose tissue
2
connective tissue
Project
187
AMP
Genome assembly (visualization)
168
GRCh38
159
hg19
Lab
186
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
187 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
4
1
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
tissue
brain
15
2
spleen
6
1
1
2
body of pancreas
4
2
2
liver
4
2
pancreas
2
1
+ See 4 more…
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