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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
491
ChIP-seq
48
single cell RNA-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
Assay category
491
DNA binding
48
Transcription
18
DNA accessibility
7
DNA methylation
Target of assay
308
transcription factor
100
histone
100
histone modification
82
recombinant protein
80
control
60
broad histone mark
58
RNA binding protein
40
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
494
bam
429
fastq
428
bigWig
398
bed narrowPeak
391
bigBed narrowPeak
92
tagAlign
83
bed broadPeak
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
564
Homo sapiens
Biosample type
376
cell line
178
tissue
10
primary cell
Organ
368
liver
109
brain
47
kidney
15
blood
15
bodily fluid
12
pancreas
10
spleen
6
epithelium
6
vasculature
3
blood vessel
2
adipose tissue
2
connective tissue
Project
517
AMP
47
KPMP
Genome assembly (visualization)
373
GRCh38
365
hg19
Lab
516
AMP-T2D consortium
47
KPMP
1
Stephen Parker, UMich
Audit category:
17
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
564 results
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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
cell line
HepG2
360
1
GM12878
15
tissue
kidney
47
layer of hippocampus
22
brain
15
2
caudate nucleus
15
substantia nigra
15
+ See 10 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
See all biosamples
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