Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
28
ChIP-seq
21
total RNA-seq
3
single cell RNA-seq
2
Hi-C
Assay category
45
DNA accessibility
28
DNA binding
24
Transcription
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
16
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
bam
49
bed narrowPeak
45
bigWig
20
tsv
17
fastq
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
2
bedpe bed3+
2
hic
Organism
99
Homo sapiens
Biosample type
78
tissue
16
cell line
5
in vitro differentiated cells
Organ
60
pancreas
16
brain
16
epithelium
14
kidney
3
adipose tissue
3
connective tissue
1
spleen
Project
99
AMP
Genome assembly (visualization)
83
GRCh38
73
hg19
Lab
84
AMP-T2D consortium
14
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
22
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
20
19
1
brain
15
kidney
11
3
body of pancreas
4
adipose tissue
1
+ See 4 more…
cell line
EndoC_BH1
1
13
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
See all biosamples
Download