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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
10
MeRIP-seq
7
ChIP-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
12
DNA accessibility
7
DNA binding
4
Transcription
Target of assay
6
control
6
histone
6
histone modification
5
broad histone mark
5
nucleotide modification
1
narrow histone mark
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
19
bigWig
17
fastq
14
bed narrowPeak
14
tagAlign
7
bigBed narrowPeak
5
bed broadPeak
4
tsv
1
bed bed3+
1
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
27
tissue
6
cell line
Organ
14
kidney
11
pancreas
7
brain
6
epithelium
1
adipose tissue
1
connective tissue
Project
33
AMP
Genome assembly (visualization)
13
GRCh38
2
hg19
Lab
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
8
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ATAC-seq
MeRIP-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
tissue
kidney
11
3
brain
7
islet of Langerhans
1
4
adipose tissue
1
cell line
EndoC_BH1
6
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