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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
12
ATAC-seq
2
total RNA-seq
1
Hi-C
Assay category
89
DNA binding
12
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
42
histone
42
histone modification
32
control
29
broad histone mark
15
transcription factor
13
narrow histone mark
11
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
92
bam
78
fastq
61
bigWig
57
bed narrowPeak
51
bigBed narrowPeak
14
tagAlign
5
bed broadPeak
2
tsv
1
bedpe
1
hic
Organism
104
Homo sapiens
Biosample type
102
tissue
2
primary cell
Organ
63
pancreas
24
adipose tissue
24
connective tissue
16
brain
2
epithelium
1
spleen
Project
104
AMP
Genome assembly (visualization)
63
GRCh38
63
hg19
Lab
98
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
body of pancreas
33
4
endocrine pancreas
16
brain
15
omental fat pad
11
1
subcutaneous adipose tissue
12
+ See 4 more…
primary cell
pancreatic acinar cell
2
See all biosamples
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