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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
15
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
MPRA
1
total RNA-seq
Assay category
19
DNA accessibility
15
DNA binding
4
Transcription
3
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
17
fastq
15
bam
14
bigWig
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
1
cell line
Organ
16
brain
14
kidney
8
pancreas
3
epithelium
2
adipose tissue
2
connective tissue
1
spleen
Project
39
AMP
3
HPAP
Genome assembly (visualization)
26
GRCh38
17
hg19
Lab
24
AMP-T2D consortium
14
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
3
audit script error
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
MPRA
total RNA-seq
tissue
brain
15
kidney
11
3
body of pancreas
4
adipose tissue
1
cerebellum (Hemisphere)
1
+ See 3 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
MIN6
1
See all biosamples
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