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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
14
ATAC-seq
13
ChIP-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
16
DNA accessibility
13
DNA binding
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
narrow histone mark
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
98
bigWig
96
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
18
bed narrowPeak
16
fastq
12
tagAlign
7
bigBed narrowPeak
4
bed bed3+
4
hdf5
3
bed broadPeak
Organism
129
Homo sapiens
Biosample type
98
tissue
31
primary cell
Organ
32
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
129
AMP
Genome assembly (visualization)
103
hg19
92
GRCh38
Lab
128
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
129 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
ChIP-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
1
13
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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