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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
75
ChIP-seq
Assay category
76
DNA accessibility
75
DNA binding
Target of assay
49
histone
49
histone modification
27
broad histone mark
26
transcription factor
22
narrow histone mark
12
RNA binding protein
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
151
bed narrowPeak
125
bam
125
tsv
94
bigWig
64
xls
60
fastq
57
txt
45
bigBed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
151
Homo sapiens
Biosample type
109
tissue
25
in vitro differentiated cells
14
cell line
3
primary cell
Organ
64
kidney
40
pancreas
17
liver
7
connective tissue
5
adipose tissue
3
epithelium
Project
151
AMP
Genome assembly (visualization)
135
GRCh38
86
hg19
Lab
71
AMP-T2D consortium
64
Katalin Susztak, Upenn
14
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
151 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
body of pancreas
25
endocrine pancreas
14
omental fat pad
3
subcutaneous adipose tissue
2
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in vitro differentiated cells
neural progenitor cell
10
13
adipocyte
1
osteoblast
1
cell line
HepG2
14
primary cell
hepatocyte
3
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