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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
106
single cell RNA-seq
76
total RNA-seq
74
ATAC-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
182
Transcription
117
DNA binding
80
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
50
histone
50
histone modification
41
control
28
broad histone mark
26
transcription factor
22
narrow histone mark
12
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
315
August, 2021
314
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
149
bed narrowPeak
125
bam
125
tsv
92
bigWig
64
xls
60
fastq
57
txt
45
bigBed narrowPeak
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
390
Homo sapiens
Biosample type
303
tissue
44
cell line
38
in vitro differentiated cells
6
primary cell
Organ
130
kidney
92
heart
57
pancreas
35
liver
24
adipose tissue
24
connective tissue
8
embryo
8
epithelium
6
blood vessel
6
vasculature
2
artery
Project
391
AMP
Genome assembly (visualization)
152
GRCh38
103
hg19
Lab
227
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
391 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
body of pancreas
33
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 15 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
primary cell
hepatocyte
4
pancreatic acinar cell
2
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