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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
495
total RNA-seq
84
RNA microarray
76
ChIP-seq
14
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
501
Transcription
76
DNA binding
14
DNA accessibility
Target of assay
30
control
30
histone
30
histone modification
19
broad histone mark
16
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
604
February, 2021
411
August, 2017
403
November, 2017
296
May, 2020
267
October, 2019
213
June, 2019
168
July, 2018
164
May, 2021
145
August, 2021
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
68
February, 2023
61
November, 2019
60
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
582
bam
542
bigWig
503
tsv
89
txt
60
fastq
56
bed narrowPeak
45
bigBed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
680
Homo sapiens
Biosample type
619
tissue
30
cell line
26
in vitro differentiated cells
5
primary cell
Organ
478
connective tissue
409
adipose tissue
150
bone element
79
pancreas
66
artery
blood vessel
66
heart
66
vasculature
28
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
680
AMP
Genome assembly (visualization)
557
hg19
551
GRCh38
Lab
680
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent control read length
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
680 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
body of pancreas
33
endocrine pancreas
16
+ See 17 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
pancreatic acinar cell
2
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