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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
total RNA-seq
29
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
Assay category
67
Transcription
29
DNA binding
27
DNA methylation
8
3D chromatin structure
6
DNA accessibility
Target of assay
32
control
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
158
bam
132
bigWig
67
tsv
60
fastq
52
bed narrowPeak
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
137
Homo sapiens
Biosample type
104
tissue
33
primary cell
Organ
36
connective tissue
30
adipose tissue
25
heart
19
pancreas
17
brain
15
epithelium
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
137
AMP
Genome assembly (visualization)
91
hg19
81
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
137 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
tissue
subcutaneous adipose tissue
4
10
1
omental fat pad
4
8
1
body of pancreas
2
8
2
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 21 more…
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