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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
42
total RNA-seq
15
small RNA-seq
14
RRBS
11
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
74
DNA binding
60
Transcription
25
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
151
bam
124
bigWig
60
fastq
60
tsv
52
bed narrowPeak
47
bigBed narrowPeak
22
bed bedMethyl
22
bigBed bedMethyl
3
bed bed3+
3
hdf5
Organism
174
Homo sapiens
Biosample type
143
tissue
31
primary cell
Organ
59
pancreas
41
connective tissue
35
adipose tissue
25
heart
18
brain
15
epithelium
12
vasculature
11
blood vessel
11
kidney
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
174
AMP
Genome assembly (visualization)
129
hg19
119
GRCh38
Lab
174
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
December, 2017
organ_slims!
liver
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
1
4
2
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 19 more…
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