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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
39
total RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
74
DNA binding
60
Transcription
21
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
151
bam
123
bigWig
60
tsv
58
fastq
52
bed narrowPeak
47
bigBed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
169
Homo sapiens
Biosample type
151
tissue
18
primary cell
Organ
59
pancreas
41
connective tissue
35
adipose tissue
25
heart
18
brain
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
169
AMP
Genome assembly (visualization)
123
hg19
119
GRCh38
Lab
169
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
4
1
2
+ See 27 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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