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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
DNase-seq
155
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
287
DNA accessibility
192
Transcription
155
DNA binding
Target of assay
76
histone
76
histone modification
60
control
49
narrow histone mark
27
broad histone mark
19
transcription factor
15
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
577
bam
517
bigWig
282
bed narrowPeak
255
bigBed narrowPeak
191
tsv
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
60
fastq
50
tagAlign
Organism
635
Homo sapiens
Biosample type
430
tissue
204
primary cell
1
cell line
Organ
196
liver
81
kidney
57
pancreas
43
musculature of body
41
connective tissue
35
heart
32
limb
30
brain
24
adipose tissue
22
epithelium
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
Project
590
AMP
45
T1D
Genome assembly (visualization)
494
hg19
464
GRCh38
Lab
590
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
635 results
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Clear Filters
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
body of pancreas
2
33
heart
18
muscle of arm
17
endocrine pancreas
16
+ See 37 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 47 more…
cell line
HepG2
1
See all biosamples
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