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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
105
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
3
total RNA-seq
Assay category
198
DNA accessibility
105
DNA binding
6
Transcription
Target of assay
49
histone
49
histone modification
37
control
27
broad histone mark
22
narrow histone mark
19
transcription factor
15
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
294
bam
257
bigWig
255
bed narrowPeak
255
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
60
fastq
2
tsv
Organism
309
Homo sapiens
Biosample type
252
tissue
57
primary cell
Organ
95
kidney
57
pancreas
43
musculature of body
42
connective tissue
35
heart
32
limb
30
brain
25
adipose tissue
22
epithelium
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
Project
309
AMP
Genome assembly (visualization)
269
GRCh38
235
hg19
Lab
295
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
26
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
309 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
tissue
body of pancreas
2
33
kidney
13
11
3
heart
18
muscle of arm
17
endocrine pancreas
16
+ See 37 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
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