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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
514
ChIP-seq
2
total RNA-seq
1
Hi-C
Assay category
514
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
287
transcription factor
118
histone
118
histone modification
104
control
69
broad histone mark
66
recombinant protein
50
RNA binding protein
49
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
502
bam
419
fastq
411
bigWig
388
bed narrowPeak
387
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
2
tsv
Organism
517
Homo sapiens
Biosample type
343
cell line
163
tissue
11
primary cell
Organ
316
liver
91
brain
53
pancreas
27
blood
27
bodily fluid
23
adipose tissue
23
connective tissue
8
epithelium
7
spleen
6
vasculature
3
blood vessel
Project
517
AMP
Genome assembly (visualization)
358
hg19
357
GRCh38
Lab
517
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
517 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
tissue
body of pancreas
33
layer of hippocampus
22
endocrine pancreas
16
caudate nucleus
15
substantia nigra
15
+ See 7 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic acinar cell
2
See all biosamples
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