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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
9
DNase-seq
7
WGBS
2
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
138
DNA binding
10
DNA accessibility
7
DNA methylation
3
Transcription
Target of assay
74
transcription factor
35
control
31
RNA binding protein
29
histone
29
histone modification
19
broad histone mark
16
recombinant protein
10
narrow histone mark
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
157
bam
142
fastq
121
bigWig
112
bed narrowPeak
112
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
tsv
1
csv
Organism
158
Homo sapiens
Biosample type
99
tissue
56
cell line
3
primary cell
Organ
59
pancreas
48
liver
24
adipose tissue
24
connective tissue
15
blood
15
bodily fluid
9
spleen
2
brain
2
epithelium
Project
158
AMP
Genome assembly (visualization)
120
GRCh38
112
hg19
Lab
158
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
tissue
body of pancreas
32
2
2
endocrine pancreas
16
omental fat pad
11
1
subcutaneous adipose tissue
12
spleen
6
1
2
+ See 4 more…
cell line
HepG2
40
1
GM12878
15
primary cell
pancreatic acinar cell
2
pancreatic cell
1
See all biosamples
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