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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
25
ATAC-seq
22
total RNA-seq
2
Hi-C
Assay category
64
DNA binding
25
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
13
control
11
transcription factor
7
RNA binding protein
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
111
bam
76
bed narrowPeak
73
bigWig
40
bigBed narrowPeak
37
fastq
22
tsv
2
bedpe bed3+
2
hic
Organism
113
Homo sapiens
Biosample type
90
tissue
16
cell line
5
in vitro differentiated cells
2
primary cell
Organ
108
pancreas
24
adipose tissue
connective tissue
18
epithelium
Project
113
AMP
Genome assembly (visualization)
100
hg19
98
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
33
endocrine pancreas
16
pancreas
2
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
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