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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
34
ATAC-seq
22
total RNA-seq
2
Hi-C
Assay category
102
DNA binding
34
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
52
histone
52
histone modification
35
broad histone mark
34
control
17
narrow histone mark
16
transcription factor
12
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
150
bam
94
bed narrowPeak
92
bigWig
77
fastq
51
bigBed narrowPeak
22
tsv
14
tagAlign
4
bed broadPeak
2
bedpe bed3+
2
hic
Organism
160
Homo sapiens
Biosample type
137
tissue
16
cell line
5
in vitro differentiated cells
2
primary cell
Organ
113
pancreas
25
adipose tissue
25
connective tissue
18
epithelium
16
brain
1
spleen
Project
160
AMP
Genome assembly (visualization)
119
hg19
118
GRCh38
Lab
159
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
22
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
20
19
1
body of pancreas
33
4
endocrine pancreas
16
brain
15
omental fat pad
11
1
+ See 5 more…
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
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