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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
37
total RNA-seq
15
RRBS
15
small RNA-seq
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
55
Transcription
51
DNA binding
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
30
histone
30
histone modification
19
broad histone mark
14
control
11
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
123
bam
115
bigWig
55
tsv
47
bed narrowPeak
42
bigBed narrowPeak
37
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
149
Homo sapiens
Biosample type
118
tissue
31
primary cell
Organ
59
pancreas
41
connective tissue
adipose tissue
25
heart
18
brain
15
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
149
AMP
Genome assembly (visualization)
121
hg19
109
GRCh38
Lab
149
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
endocrine pancreas
16
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
gastrocnemius medialis
4
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
pancreatic acinar cell
2
renal cortical epithelial cell
1
1
+ See 20 more…
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