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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
ChIP-seq
25
total RNA-seq
ATAC-seq
10
DNase-seq
4
pCHi-C
3
Hi-C
1
FAIRE-seq
Assay category
230
DNA binding
25
Transcription
11
DNA accessibility
3
3D chromatin structure
Target of assay
194
histone
194
histone modification
139
narrow histone mark
55
broad histone mark
36
control
Date released
565
February, 2021
406
August, 2017
406
November, 2017
291
May, 2021
273
October, 2019
240
August, 2021
237
May, 2020
192
June, 2019
162
July, 2018
123
May, 2022
117
May, 2019
100
February, 2023
100
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
20
November, 2019
19
April, 2020
16
January, 2021
15
October, 2017
9
November, 2020
8
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
2
June, 2018
1
August, 2022
1
March, 2019
Available data
227
bam
188
bigWig
174
bed narrowPeak
67
bigBed narrowPeak
49
tagAlign
11
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
273
Homo sapiens
Biosample type
224
tissue
32
primary cell
17
cell line
Organ
83
brain
67
limb
46
blood vessel
46
vasculature
41
nerve
34
epithelium
25
artery
21
vein
20
eye
17
kidney
15
pancreas
8
heart
6
liver
4
gonad
4
ovary
1
connective tissue
1
lymph node
1
pituitary gland
Project
273
AMP
Genome assembly (visualization)
192
hg19
187
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
273 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
tibial nerve
35
4
2
islet of Langerhans
21
14
4
tibial artery
23
2
heart
5
2
1
brain
5
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
cell line
Panc1
13
1
1
glomerular visceral epithelial cell
1
1
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