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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
16
ATAC-seq
14
total RNA-seq
4
Hi-C
4
pCHi-C
2
DNase-seq
1
FAIRE-seq
Assay category
66
DNA binding
19
DNA accessibility
14
Transcription
4
3D chromatin structure
Target of assay
39
control
27
histone
27
histone modification
22
narrow histone mark
5
broad histone mark
Date released
214
August, 2021
162
August, 2017
134
May, 2020
126
November, 2017
107
October, 2019
106
May, 2021
102
February, 2021
71
February, 2023
66
May, 2022
46
March, 2020
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
17
December, 2017
16
April, 2019
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
46
bam
9
tagAlign
6
bigWig
4
bigBed narrowPeak
4
hic
3
bedpe bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed narrowPeak
1
tar
Organism
107
Homo sapiens
Biosample type
81
tissue
12
primary cell
10
cell line
4
in vitro differentiated cells
Organ
21
eye
17
limb
14
blood vessel
14
vasculature
12
epithelium
11
nerve
10
pancreas
9
vein
8
brain
8
kidney
5
artery
4
connective tissue
4
gonad
4
ovary
1
adipose tissue
1
heart
1
lymph node
1
pituitary gland
1
skin of body
Project
107
AMP
Genome assembly (visualization)
217
hg19
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
21
13
14
4
tibial nerve
11
tibial artery
5
kidney
2
adipose tissue
1
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primary cell
endothelial cell of umbilical vein
7
1
1
epithelial cell of proximal tubule
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
7
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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