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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
24
total RNA-seq
18
ATAC-seq
8
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
Assay category
217
DNA binding
27
DNA accessibility
24
Transcription
2
3D chromatin structure
Target of assay
187
histone
187
histone modification
136
narrow histone mark
51
broad histone mark
30
control
Date released
517
February, 2021
411
August, 2017
332
May, 2020
309
May, 2021
275
August, 2021
274
October, 2019
200
May, 2022
192
June, 2019
188
February, 2023
162
July, 2018
117
May, 2019
106
July, 2019
91
November, 2017
90
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
43
March, 2020
39
February, 2018
39
November, 2019
27
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
March, 2023
3
October, 2022
2
June, 2018
1
August, 2022
Available data
213
bam
183
bigWig
168
bed narrowPeak
62
bigBed narrowPeak
49
tagAlign
10
tsv
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
274
Homo sapiens
Biosample type
240
tissue
32
primary cell
cell line
2
in vitro differentiated cells
Organ
84
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
32
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
6
liver
4
connective tissue
4
gonad
4
ovary
3
pancreas
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
274
AMP
Genome assembly (visualization)
187
hg19
179
GRCh38
Lab
274
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
274 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
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primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
in vitro differentiated cells
adipocyte
2
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