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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
22
total RNA-seq
20
ATAC-seq
4
DNase-seq
4
pCHi-C
2
Hi-C
Assay category
193
DNA binding
24
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
166
histone
166
histone modification
127
narrow histone mark
39
broad histone mark
27
control
Date released
461
February, 2021
284
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
185
bam
158
bigWig
149
bed narrowPeak
49
tagAlign
47
bigBed narrowPeak
8
tsv
5
bed broadPeak
4
bed bed3+
4
bigBed broadPeak
2
hic
1
bedpe
1
bedpe bed3+
1
fastq
1
tagAlign bed3+
Organism
245
Homo sapiens
Biosample type
245
tissue
32
primary cell
17
cell line
2
in vitro differentiated cells
Organ
84
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
8
pancreas
6
liver
4
gonad
4
kidney
4
ovary
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
245
AMP
Genome assembly (visualization)
164
hg19
161
GRCh38
Lab
240
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
245 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
17
4
1
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
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