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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
11
total RNA-seq
8
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
207
DNA binding
11
DNA accessibility
11
Transcription
Target of assay
171
histone
171
histone modification
116
narrow histone mark
55
broad histone mark
36
control
Date released
528
February, 2021
392
November, 2017
282
August, 2017
275
May, 2020
229
October, 2019
204
May, 2021
192
June, 2019
158
July, 2018
117
May, 2019
90
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
49
April, 2018
49
August, 2021
39
February, 2018
38
November, 2019
34
December, 2018
30
January, 2019
24
May, 2022
15
October, 2017
11
March, 2020
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
2
June, 2018
1
March, 2019
0
October, 2022
Available data
229
bam
193
bigWig
176
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
11
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
5
hic
4
bedpe bed3+
3
cool
1
hdf5
1
tagAlign bed3+
1
tar
1
txt
Organism
229
Homo sapiens
Biosample type
184
tissue
29
primary cell
16
cell line
Organ
81
brain
68
limb
46
blood vessel
46
vasculature
42
nerve
31
epithelium
26
artery
20
vein
15
kidney
14
pancreas
7
heart
6
liver
1
pituitary gland
Project
229
AMP
Genome assembly (visualization)
189
hg19
186
GRCh38
Lab
229
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
tibial nerve
35
4
2
1
tibial artery
23
2
1
heart
5
2
brain
5
1
liver
5
1
+ See 72 more…
primary cell
endothelial cell of umbilical vein
17
2
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
13
1
glomerular visceral epithelial cell
1
1
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