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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
ChIP-seq
37
total RNA-seq
16
ATAC-seq
8
DNase-seq
1
FAIRE-seq
Assay category
239
DNA binding
37
Transcription
25
DNA accessibility
Target of assay
203
histone
203
histone modification
131
narrow histone mark
72
broad histone mark
36
control
Date released
528
February, 2021
392
November, 2017
282
August, 2017
275
May, 2020
229
October, 2019
204
May, 2021
192
June, 2019
158
July, 2018
117
May, 2019
90
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
49
April, 2018
49
August, 2021
39
February, 2018
38
November, 2019
34
December, 2018
30
January, 2019
24
May, 2022
15
October, 2017
11
March, 2020
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
2
June, 2018
1
March, 2019
Available data
301
bam
265
bigWig
222
bed narrowPeak
84
bigBed narrowPeak
73
fastq
49
tagAlign
37
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
hic
1
bedpe bed3+
1
csv
1
hdf5
1
tagAlign bed3+
1
tar
Organism
301
Homo sapiens
Biosample type
184
tissue
101
primary cell
16
cell line
Organ
92
epithelium
86
pancreas
81
brain
68
limb
46
blood vessel
46
vasculature
42
nerve
26
artery
20
vein
15
kidney
7
heart
6
liver
1
pituitary gland
Project
301
AMP
Genome assembly (visualization)
261
hg19
258
GRCh38
Lab
301
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
32
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
301 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
brain
5
1
liver
5
1
+ See 72 more…
primary cell
pancreatic ductal cell
13
4
4
endothelial cell of umbilical vein
17
2
1
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
+ See 4 more…
cell line
Panc1
13
1
glomerular visceral epithelial cell
1
1
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