Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
216
total RNA-seq
122
ATAC-seq
8
DNase-seq
4
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
269
DNA binding
216
Transcription
131
DNA accessibility
4
3D chromatin structure
Target of assay
216
histone
216
histone modification
165
narrow histone mark
53
control
51
broad histone mark
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
504
bam
447
bigWig
201
bed narrowPeak
200
tsv
99
tagAlign
62
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
4
hic
3
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
624
Homo sapiens
Biosample type
435
tissue
181
primary cell
cell line
8
in vitro differentiated cells
Organ
200
liver
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
33
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
4
connective tissue
4
gonad
4
ovary
3
pancreas
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
579
AMP
45
T1D
Genome assembly (visualization)
457
hg19
394
GRCh38
Lab
579
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
624 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
liver
55
144
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
+ See 78 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
1
1
macrophage
11
epithelial cell of proximal tubule
7
+ See 30 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
Download