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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
47
single cell RNA-seq
26
total RNA-seq
22
ATAC-seq
8
DNase-seq
4
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
219
DNA binding
73
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
189
histone
189
histone modification
138
narrow histone mark
51
broad histone mark
30
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
221
bam
187
bigWig
174
bed narrowPeak
62
bigBed narrowPeak
49
tagAlign
12
tsv
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
4
hic
3
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
331
Homo sapiens
Biosample type
289
tissue
34
primary cell
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
62
kidney
47
blood vessel
47
vasculature
42
nerve
33
epithelium
26
artery
21
eye
21
vein
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
3
pancreas
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
284
AMP
47
KPMP
Genome assembly (visualization)
197
hg19
187
GRCh38
Lab
284
AMP-T2D consortium
47
KPMP
Audit category:
10
inconsistent ontology term
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
331 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
kidney
4
47
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
+ See 78 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
+ See 1 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
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