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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
17
total RNA-seq
4
ATAC-seq
2
Hi-C
Assay category
24
DNA binding
17
Transcription
4
DNA accessibility
2
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
43
bam
39
fastq
35
bigWig
18
bed narrowPeak
17
tsv
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
47
Homo sapiens
Biosample type
242
tissue
47
in vitro differentiated cells
34
primary cell
30
cell line
Organ
13
embryo
2
connective tissue
Project
47
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
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