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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
3
single cell RNA-seq
2
DNase-seq
2
total RNA-seq
1
Hi-C
Assay category
8
DNA binding
5
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
5
histone
5
histone modification
4
broad histone mark
3
control
1
narrow histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
34
bam
26
bigWig
bed narrowPeak
13
bigBed narrowPeak
5
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
1
hic
1
tar
Organism
16
Homo sapiens
Biosample type
91
tissue
16
primary cell
15
cell line
6
in vitro differentiated cells
Organ
14
epithelium
8
blood vessel
8
vasculature
8
vein
5
kidney
1
pancreas
Project
16
AMP
Genome assembly (visualization)
8
hg19
5
GRCh38
Lab
16
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
Hi-C
primary cell
endothelial cell of umbilical vein
7
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
epithelial cell of proximal tubule
1
pancreatic cell
1
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