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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
24
ChIP-seq
12
single cell RNA-seq
6
WGBS
4
DNase-seq
3
ATAC-seq
3
total RNA-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
35
DNA accessibility
24
DNA binding
15
Transcription
6
DNA methylation
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
45
fastq
34
bam
25
bigWig
22
bed narrowPeak
13
bigBed narrowPeak
9
tsv
4
bed broadPeak
4
bigBed broadPeak
3
bed bed3+
1
bed bed3
1
hic
1
tar
Organism
82
Homo sapiens
Biosample type
787
tissue
126
cell line
82
primary cell
34
in vitro differentiated cells
Organ
39
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
6
pancreas
3
connective tissue
1
liver
Project
45
HPAP
37
AMP
Genome assembly (visualization)
29
hg19
24
GRCh38
Lab
45
Klaus Kaestner, Upenn
37
AMP-T2D consortium
Audit category:
28
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
82 results
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snATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
27
12
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic alpha cell
6
osteoblast
1
1
1
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