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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ATAC-seq
41
WGBS
33
single cell RNA-seq
24
ChIP-seq
21
snATAC-seq
4
DNase-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
67
DNA accessibility
41
DNA methylation
35
Transcription
24
DNA binding
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
134
zippedFastqFolder
31
bam
23
bigWig
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
168
Homo sapiens
Biosample type
308
tissue
168
primary cell
30
cell line
8
in vitro differentiated cells
Organ
113
epithelium
80
pancreas
21
blood vessel
21
vasculature
21
vein
11
kidney
1
liver
Project
134
HPAP
34
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
134
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
168 results
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ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
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